We also offer command-line utilities for many file conversions and basic bioinformatics functions. You can learn more and download these utilities through the utilities section of our downloads page.
The following tools and utilities created by outside groups may be helpful when working with our file formats and the genome annotation databases that we provide. References to these tools are provided for the benefit of our users. We are unable to support the use of externally developed tools; if you have questions or problems, please contact the developers of the tool directly. JavaScript is disabled in your web browser You must have JavaScript enabled in your web browser to use the Genome Browser.
Gene Interactions - displays a gene interaction and pathway graph based on data from curated protein-interaction databases and text mining of PubMed abstracts. VisiGene - displays high-quality images of in-situ mouse and frogs with gene mRNA hybridization probes and transcription factors.
We do not encourage the use of FTP for downloading large data files. Rsync is a more efficient and convenient transport mechanism, and is therefore quicker and easier to use for downloading our data files. However, here are the command line steps for FTP, should you choose to use it:.
To download multiple files from the UNIX ftp command line, use the "mget" command. You may want to use the prompt command to toggle the interactive mode if you do not want to be prompted for each file that you download. JavaScript is disabled in your web browser You must have JavaScript enabled in your web browser to use the Genome Browser. Downloading data Rsync recommended method We recommend that you download data via rsync using the command line, especially for large files using the North American or European download servers.
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